Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Pax6

Cell type

Cell type Class
Others
Cell type
Alpha-TN4
NA
NA

Attributes by original data submitter

Sample

source_name
αTN4, control shRNA, Pol2 ChIP
cell line
alpha-TN4
cell type
lens epithelial cell line
shRNA
control
chip antibody
Pax6 (Millipore, AB2237, lot# 2506390)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
33107345
Reads aligned (%)
97.6
Duplicates removed (%)
13.2
Number of peaks
12284 (qval < 1E-05)

mm9

Number of total reads
33107345
Reads aligned (%)
97.5
Duplicates removed (%)
13.3
Number of peaks
12281 (qval < 1E-05)

Base call quality data from DBCLS SRA